Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1111PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Swoo_1307
PFAM: SapC family protein; KEGG: sse:Ssed_1210 SapC family protein.
  
     0.510
Swoo_3838
PFAM: SapC family protein; KEGG: cps:CPS_0240 hypothetical protein.
  
     0.493
Swoo_1112
PFAM: protein of unknown function DUF861 cupin_3; KEGG: spl:Spea_0934 protein of unknown function DUF861 cupin_3.
  
    0.491
Swoo_3308
PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_1344 PepSY-associated TM helix domain protein.
  
     0.490
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
    0.435
Swoo_3658
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.422
Swoo_3307
KEGG: sse:Ssed_1345 hypothetical protein.
  
     0.412
Swoo_3016
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sse:Ssed_1639 major facilitator superfamily MFS_1.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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