Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1118Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_2735 transcriptional regulator, LysR family. (305 aa)    
Predicted Functional Partners:
Swoo_1117
PFAM: beta-lactamase domain protein; KEGG: ecv:APECO1_3784 hypothetical protein.
  
    0.564
Swoo_2966
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_4011 transcriptional regulator, LysR family.
  
     0.531
Swoo_0601
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRA2493 hypothetical protein.
  
     0.526
Swoo_3932
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB0169 hypothetical protein.
  
     0.510
Swoo_4058
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3712 transcriptional regulator.
  
     0.484
Swoo_0591
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_4064 transcriptional regulator, LysR family.
  
     0.471
Swoo_4804
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_06296 transcriptional regulator.
  
     0.471
Swoo_2435
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_1391 probable transcriptional regulator.
  
     0.463
Swoo_2584
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2021 transcriptional regulator, LysR family.
  
     0.462
Swoo_0840
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: amr:AM1_2260 transcriptional regulator, LysR family.
  
     0.455
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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