STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1122PFAM: nitroreductase; KEGG: nmr:Nmar_1696 nitroreductase. (200 aa)    
Predicted Functional Partners:
Swoo_3928
PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: spl:Spea_3253 protein of unknown function DUF181.
  
  
 0.572
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.546
Swoo_1123
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VPA0216 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.516
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.467
Swoo_2454
PFAM: nitroreductase; KEGG: spl:Spea_2510 nitroreductase.
  
     0.458
Swoo_2004
PFAM: ABC-2 type transporter; KEGG: mth:MTH1092 ABC-2 type transport system permease protein.
  
    0.413
Swoo_2261
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein.
  
    0.413
Swoo_3816
PFAM: ABC-2 type transporter; KEGG: spl:Spea_0690 ABC-2 type transporter.
  
    0.413
Swoo_4363
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_0585 ABC-2 type transporter.
  
    0.413
Swoo_4391
PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_0490 hypothetical protein.
  
    0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.