STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1127PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1057 FAD dependent oxidoreductase. (435 aa)    
Predicted Functional Partners:
Swoo_1115
PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_1045 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
 
 
  0.923
Swoo_2722
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1866 FAD dependent oxidoreductase.
  
 
 
0.918
Swoo_1135
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1065 FAD dependent oxidoreductase.
  
  
 
0.907
Swoo_1130
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase.
 
  
 0.808
Swoo_1128
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_1058 transcriptional regulator, XRE family.
 
  
 0.805
Swoo_1129
PFAM: peptidase C26; KEGG: sse:Ssed_1059 peptidase C26.
 
  
 0.803
Swoo_1114
PFAM: aminotransferase class-III; KEGG: sse:Ssed_1044 beta-alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.663
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.522
Swoo_1131
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.498
Swoo_3862
KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.497
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.