Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1129PFAM: peptidase C26; KEGG: sse:Ssed_1059 peptidase C26. (253 aa)    
Predicted Functional Partners:
Swoo_1130
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase.
 
  
 0.953
Swoo_1135
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1065 FAD dependent oxidoreductase.
 
  
 0.855
Swoo_1127
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1057 FAD dependent oxidoreductase.
 
  
 0.838
Swoo_2722
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1866 FAD dependent oxidoreductase.
 
  
 0.835
Swoo_2389
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_2235 FAD dependent oxidoreductase.
 
  
 0.722
Swoo_1128
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_1058 transcriptional regulator, XRE family.
 
  
 0.666
Swoo_1131
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.639
Swoo_1133
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1063 binding-protein-dependent transport systems inner membrane component.
 
   
 0.582
Swoo_2101
PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein.
  
  
 0.576
Swoo_4643
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I.
  
  
 0.576
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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