Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1133PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1063 binding-protein-dependent transport systems inner membrane component. (301 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.999
Swoo_1134
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1064 ornithine carbamoyltransferase.
 0.999
Swoo_1131
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.994
Swoo_0998
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sse:Ssed_0947 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.934
Swoo_4786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_4395 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
 
 
 0.919
Swoo_1135
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1065 FAD dependent oxidoreductase.
 
  
 0.707
Swoo_2390
KEGG: sse:Ssed_2234 spermidine/putrescine-binding periplasmic protein-like protein.
  
  
 0.694
Swoo_3366
KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like.
  
  
 0.694
Swoo_1129
PFAM: peptidase C26; KEGG: sse:Ssed_1059 peptidase C26.
 
   
 0.582
Swoo_1130
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase.
 
   
 0.550
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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