Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1163PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sse:Ssed_1082 ErfK/YbiS/YcfS/YnhG family protein. (301 aa)    
Predicted Functional Partners:
Swoo_3246
KEGG: shn:Shewana3_3390 hypothetical protein.
 
  
 0.637
Swoo_2767
KEGG: slo:Shew_1490 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.625
Swoo_1162
KEGG: sse:Ssed_1081 rRNA (guanine-N(1)-)-methyltransferase.
       0.551
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.500
Swoo_1164
Hypothetical protein.
       0.485
Swoo_2687
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: spl:Spea_2436 surface antigen (D15).
 
   
 0.472
Swoo_2153
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sse:Ssed_2451 peptidoglycan-binding domain 1 protein.
 
  
 0.429
Swoo_2778
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: slo:Shew_1478 protein of unknown function DUF1722.
 
     0.428
Swoo_1159
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.400
Swoo_1160
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: sse:Ssed_1079 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.
       0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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