Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1175PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: spl:Spea_0981 oxidoreductase molybdopterin binding. (408 aa)    
Predicted Functional Partners:
Swoo_1174
KEGG: spl:Spea_0980 hypothetical protein.
 
   
 0.971
Swoo_1173
PFAM: cytochrome c class I; KEGG: spl:Spea_0979 cytochrome c class I.
     
 0.785
Swoo_1176
PFAM: cytochrome c class I; KEGG: spl:Spea_0982 cytochrome c class I.
     
 0.784
msrQ
Ferric reductase domain protein transmembrane component domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the r [...]
  
  
 0.748
Swoo_3983
PFAM: YceI family protein; KEGG: mfa:Mfla_1355 YceI.
  
 
 0.714
Swoo_0837
KEGG: sbl:Sbal_0644 hypothetical protein.
   
 
 0.613
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
  
     0.566
Swoo_0090
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_0127 acetyltransferase, GNAT family.
  
     0.558
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
   
 
 0.469
Swoo_2901
KEGG: spl:Spea_1657 conserved hypothetical protein.
 
 
 
 0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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