Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_1185KEGG: sfr:Sfri_3618 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Swoo_1186
PFAM: amidohydrolase; KEGG: hne:HNE_0404 amidohydrolase family protein.
 
     0.708
Swoo_1187
KEGG: sdn:Sden_1870 hypothetical protein.
       0.588
Swoo_1141
SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_1122 transcription factor jumonji, JmjC domain protein.
  
     0.548
Swoo_0991
PFAM: Phosphoglycerate mutase; KEGG: sse:Ssed_0941 hypothetical protein.
 
     0.467
Swoo_1144
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbm:Shew185_1180 TonB-dependent receptor plug.
  
     0.459
Swoo_0386
KEGG: spl:Spea_0282 conserved hypothetical protein.
  
     0.454
Swoo_4129
KEGG: sdn:Sden_2969 hypothetical protein.
  
     0.449
Swoo_2335
KEGG: sse:Ssed_2276 hypothetical protein.
  
     0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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