Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1190Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. (271 aa)    
Predicted Functional Partners:
Swoo_1191
KEGG: stm:STM0409 hypothetical protein.
 
     0.773
Swoo_1189
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_0899 glyoxalase family protein.
 
     0.619
Swoo_4500
PFAM: beta-lactamase; KEGG: pat:Patl_3770 beta-lactamase.
  
     0.575
Swoo_2366
PFAM: DGPFAETKE family protein; KEGG: rba:RB8484 hypothetical protein.
  
     0.528
Swoo_3142
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_2785 helix-turn-helix, type 11 domain protein.
  
     0.486
Swoo_2367
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: hch:HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain.
  
     0.449
Swoo_1105
PFAM: regulatory protein MarR; KEGG: slo:Shew_3148 transcriptional regulator, MarR family.
  
    0.444
Swoo_3542
PFAM: putative esterase; KEGG: slo:Shew_1666 putative esterase.
  
    0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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