Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Swoo_0463 | Swoo_1191 | PFAM: Inner membrane CreD family protein; KEGG: sse:Ssed_4153 inner membrane protein, putative. | KEGG: stm:STM0409 hypothetical protein. | 0.422 |
Swoo_0944 | Swoo_1191 | KEGG: sfr:Sfri_3542 hypothetical protein. | KEGG: stm:STM0409 hypothetical protein. | 0.453 |
Swoo_1189 | Swoo_1190 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_0899 glyoxalase family protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | 0.619 |
Swoo_1189 | Swoo_1191 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_0899 glyoxalase family protein. | KEGG: stm:STM0409 hypothetical protein. | 0.418 |
Swoo_1190 | Swoo_1189 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_0899 glyoxalase family protein. | 0.619 |
Swoo_1190 | Swoo_1191 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | KEGG: stm:STM0409 hypothetical protein. | 0.774 |
Swoo_1190 | Swoo_3142 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_2785 helix-turn-helix, type 11 domain protein. | 0.486 |
Swoo_1191 | Swoo_0463 | KEGG: stm:STM0409 hypothetical protein. | PFAM: Inner membrane CreD family protein; KEGG: sse:Ssed_4153 inner membrane protein, putative. | 0.422 |
Swoo_1191 | Swoo_0944 | KEGG: stm:STM0409 hypothetical protein. | KEGG: sfr:Sfri_3542 hypothetical protein. | 0.453 |
Swoo_1191 | Swoo_1189 | KEGG: stm:STM0409 hypothetical protein. | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_0899 glyoxalase family protein. | 0.418 |
Swoo_1191 | Swoo_1190 | KEGG: stm:STM0409 hypothetical protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | 0.774 |
Swoo_1191 | Swoo_1192 | KEGG: stm:STM0409 hypothetical protein. | Conserved hypothetical protein; KEGG: bld:BLi00372 similar to proteins. | 0.461 |
Swoo_1191 | Swoo_3142 | KEGG: stm:STM0409 hypothetical protein. | PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_2785 helix-turn-helix, type 11 domain protein. | 0.723 |
Swoo_1192 | Swoo_1191 | Conserved hypothetical protein; KEGG: bld:BLi00372 similar to proteins. | KEGG: stm:STM0409 hypothetical protein. | 0.461 |
Swoo_3142 | Swoo_1190 | PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_2785 helix-turn-helix, type 11 domain protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1420 hypothetical protein. | 0.486 |
Swoo_3142 | Swoo_1191 | PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_2785 helix-turn-helix, type 11 domain protein. | KEGG: stm:STM0409 hypothetical protein. | 0.723 |