Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1194PFAM: conserved hypothetical protein; KEGG: spl:Spea_1005 conserved hypothetical protein. (234 aa)    
Predicted Functional Partners:
Swoo_1195
KEGG: sse:Ssed_1118 putative transporter, BCCT family protein.
  
    0.757
Swoo_3360
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.672
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.595
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.550
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
     0.545
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.513
Swoo_1193
PFAM: regulatory protein MarR; KEGG: spl:Spea_1004 transcriptional regulator, MarR family.
       0.508
Swoo_3753
KEGG: slo:Shew_2612 hypothetical protein.
  
     0.479
Swoo_3308
PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_1344 PepSY-associated TM helix domain protein.
  
     0.448
Swoo_1307
PFAM: SapC family protein; KEGG: sse:Ssed_1210 SapC family protein.
  
     0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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