STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1202KEGG: sse:Ssed_1094 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Swoo_2163
KEGG: sse:Ssed_2442 hypothetical protein.
  
     0.649
Swoo_2784
KEGG: sse:Ssed_1811 hypothetical protein.
  
     0.605
Swoo_1201
PFAM: Chloride channel core; KEGG: sse:Ssed_1093 Cl-channel, voltage-gated family protein.
       0.604
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.603
Swoo_4725
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.551
Swoo_3446
PFAM: YfaZ family protein; KEGG: sse:Ssed_3297 YfaZ family protein.
  
     0.548
Swoo_2221
KEGG: sse:Ssed_3817 hypothetical protein.
  
    0.541
Swoo_4724
PFAM: type II secretion system protein N; KEGG: sse:Ssed_4348 type II secretion system protein N.
  
     0.537
Swoo_2220
KEGG: son:SO_2101 lipoprotein, putative.
  
     0.528
Swoo_4526
PFAM: peptidase M23B; KEGG: sse:Ssed_0417 peptidase M23B.
  
     0.521
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.