Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1208PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: spl:Spea_0990 peptidase S9 prolyl oligopeptidase active site domain protein. (849 aa)    
Predicted Functional Partners:
Swoo_4754
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_4365 conserved hypothetical carboxypeptidase.
  
     0.570
Swoo_3891
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.521
Swoo_4261
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL1172 secreted dipeptidyl aminopeptidase.
  
     0.521
Swoo_1207
PFAM: Alkaline phosphatase; KEGG: spl:Spea_0989 alkaline phosphatase; Belongs to the alkaline phosphatase family.
       0.519
Swoo_4483
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_0476 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.506
Swoo_0844
PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sfr:Sfri_3832 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.477
Swoo_4321
KEGG: sse:Ssed_0628 hypothetical protein.
  
     0.441
Swoo_3315
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.407
Swoo_0999
KEGG: shn:Shewana3_3514 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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