STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1209PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: spl:Spea_0992 putative two component transcriptional regulator, winged helix family. (714 aa)    
Predicted Functional Partners:
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
 
 
 0.746
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
 
 
 0.720
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
 
   0.713
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.696
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.695
Swoo_2263
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0679 conserved hypothetical TonB-dependent receptor.
 
 
   0.662
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.658
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.657
Swoo_3457
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_3308 tetratricopeptide TPR_2 repeat protein.
  
     0.650
Swoo_2845
KEGG: sse:Ssed_1739 hypothetical protein.
  
     0.634
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.