Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_1252PFAM: cytochrome c assembly protein; KEGG: sse:Ssed_1157 cytochrome c assembly protein. (262 aa)    
Predicted Functional Partners:
Swoo_0896
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.709
Swoo_0400
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_4193 DsbA oxidoreductase.
 
     0.702
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
  
     0.692
Swoo_1251
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sse:Ssed_1156 protein of unknown function DUF21.
  
  
 0.635
Swoo_2786
PFAM: protein of unknown function DUF1414; KEGG: sse:Ssed_1809 protein of unknown function DUF1414; Belongs to the UPF0352 family.
  
    0.635
Swoo_2037
PFAM: protein of unknown function DUF177; KEGG: sse:Ssed_2629 protein of unknown function DUF177.
 
     0.621
Swoo_3704
DNA polymerase III, delta subunit; KEGG: sse:Ssed_3481 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
  
     0.621
Swoo_4162
PFAM: Stringent starvation protein B; KEGG: sse:Ssed_0805 stringent starvation protein B.
  
     0.619
Swoo_1546
PFAM: Tetratricopeptide TPR_4; KEGG: sse:Ssed_1434 tetratricopeptide TPR_4.
  
     0.605
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.599
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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