Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1267TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sse:Ssed_1172 Trp operon repressor. (92 aa)    
Predicted Functional Partners:
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sse:Ssed_1683 indole-3-glycerol-phosphate synthase, phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
 
   
 0.753
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.744
Swoo_0182
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0202 aromatic amino acid transporter.
 
   
 0.692
yihI
Protein of unknown function DUF414; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
    0.670
Swoo_0969
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0928 uncharacterized conserved protein UCP006287; Belongs to the UPF0231 family.
  
     0.664
Swoo_3878
PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_3938 aromatic amino acid permease.
  
   
 0.654
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.652
Swoo_1263
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sse:Ssed_1168 chorismate mutase.
 
   
 0.634
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.630
Swoo_4334
KEGG: sse:Ssed_0616 hypothetical protein.
  
     0.620
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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