Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1296KEGG: saz:Sama_0929 type IV pilus assembly protein PilW. (326 aa)    
Predicted Functional Partners:
Swoo_1295
TIGRFAM: type IV pilus modification protein PilV; KEGG: spl:Spea_1087 type IV pilus modification protein PilV.
 
  
 0.996
Swoo_1298
KEGG: sbm:Shew185_1128 type IV pilin biogenesis protein, putative.
 
  
 0.975
Swoo_1299
Type IV pilus biogenesis protein PilE; KEGG: sdn:Sden_2715 methylation.
 
  
 0.973
Swoo_1297
KEGG: spl:Spea_1089 type IV pilus assembly protein PilX.
  
  
 0.942
Swoo_1367
KEGG: shn:Shewana3_1087 undecaprenol kinase, rRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.936
Swoo_1302
KEGG: sse:Ssed_1205 type IV pilus biogenesis protein, putative.
 
  
 0.908
Swoo_0338
PFAM: Pilus assembly protein PilP; KEGG: sse:Ssed_4267 methyl-accepting chemotaxis sensory transducer.
  
  
 0.876
Swoo_1301
KEGG: spl:Spea_1093 type IV pilus biogenesis protein, putative.
 
  
 0.840
Swoo_4404
KEGG: sse:Ssed_0556 MSHA biogenesis protein MshP.
 
  
 0.813
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.761
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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