Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1297KEGG: spl:Spea_1089 type IV pilus assembly protein PilX. (142 aa)    
Predicted Functional Partners:
Swoo_1296
KEGG: saz:Sama_0929 type IV pilus assembly protein PilW.
  
  
 0.942
Swoo_1295
TIGRFAM: type IV pilus modification protein PilV; KEGG: spl:Spea_1087 type IV pilus modification protein PilV.
  
  
 0.938
Swoo_1299
Type IV pilus biogenesis protein PilE; KEGG: sdn:Sden_2715 methylation.
  
  
 0.903
Swoo_1298
KEGG: sbm:Shew185_1128 type IV pilin biogenesis protein, putative.
  
  
 0.899
Swoo_1300
KEGG: sse:Ssed_1203 hypothetical protein.
       0.743
Swoo_1302
KEGG: sse:Ssed_1205 type IV pilus biogenesis protein, putative.
  
  
 0.698
Swoo_1367
KEGG: shn:Shewana3_1087 undecaprenol kinase, rRNA (guanine-N(1)-)-methyltransferase.
  
  
 0.577
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.527
Swoo_1293
KEGG: sse:Ssed_1196 peptidylprolyl isomerase, FKBP-type.
       0.527
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.525
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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