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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1302KEGG: sse:Ssed_1205 type IV pilus biogenesis protein, putative. (169 aa)    
Predicted Functional Partners:
Swoo_1295
TIGRFAM: type IV pilus modification protein PilV; KEGG: spl:Spea_1087 type IV pilus modification protein PilV.
 
  
 0.910
Swoo_1296
KEGG: saz:Sama_0929 type IV pilus assembly protein PilW.
 
  
 0.894
Swoo_0338
PFAM: Pilus assembly protein PilP; KEGG: sse:Ssed_4267 methyl-accepting chemotaxis sensory transducer.
  
  
 0.825
Swoo_1298
KEGG: sbm:Shew185_1128 type IV pilin biogenesis protein, putative.
 
  
 0.800
Swoo_1367
KEGG: shn:Shewana3_1087 undecaprenol kinase, rRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.794
Swoo_0336
PFAM: Fimbrial assembly family protein; KEGG: sse:Ssed_4269 fimbrial assembly family protein.
 
  
 0.721
Swoo_0337
PFAM: Pilus assembly protein PilO; KEGG: sse:Ssed_4268 pilus assembly protein, PilO.
 
   
 0.698
Swoo_1297
KEGG: spl:Spea_1089 type IV pilus assembly protein PilX.
  
  
 0.697
Swoo_0335
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sse:Ssed_4270 type IV pilus assembly protein PilM.
 
   
 0.670
Swoo_1299
Type IV pilus biogenesis protein PilE; KEGG: sdn:Sden_2715 methylation.
 
  
 0.669
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.