Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1304Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sse:Ssed_1207 alanine racemase. (340 aa)    
Predicted Functional Partners:
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
    
 
 0.784
Swoo_1305
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2708 TonB-dependent receptor.
 
     0.657
Swoo_4244
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sse:Ssed_0722 phosphocarrier protein NPR.
 
 
 
 0.647
Swoo_2209
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2029 TonB-dependent receptor.
  
     0.599
Swoo_2192
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sse:Ssed_2414 phosphocarrier, HPr family.
   
 
 0.598
Swoo_2921
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1021 TonB-dependent receptor.
  
     0.570
Swoo_2924
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_3035 TonB-dependent receptor.
  
     0.565
Swoo_1315
TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1215 glucose/galactose transporter.
 
   
 0.553
Swoo_2202
PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_1925 major facilitator superfamily MFS_1.
 
   
 0.547
Swoo_1141
SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_1122 transcription factor jumonji, JmjC domain protein.
  
     0.539
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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