Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1306PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase. (507 aa)    
Predicted Functional Partners:
Swoo_1305
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2708 TonB-dependent receptor.
 
     0.886
Swoo_1141
SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_1122 transcription factor jumonji, JmjC domain protein.
 
     0.775
Swoo_1142
PFAM: SapC family protein; KEGG: sfr:Sfri_1311 SapC family protein.
 
     0.772
Swoo_1144
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbm:Shew185_1180 TonB-dependent receptor plug.
 
     0.764
Swoo_2209
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2029 TonB-dependent receptor.
 
     0.750
Swoo_3838
PFAM: SapC family protein; KEGG: cps:CPS_0240 hypothetical protein.
 
     0.747
Swoo_3836
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2390 argininosuccinate synthase.
 
     0.723
Swoo_1139
KEGG: sbl:Sbal_1120 hypothetical protein.
  
    0.720
Swoo_3939
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_0970 TonB-dependent receptor.
 
     0.718
Swoo_3839
KEGG: cps:CPS_0241 hypothetical protein.
  
    0.703
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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