Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Swoo_1348KEGG: sse:Ssed_1248 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Swoo_1349
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_1249 alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.811
Swoo_1350
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_1250 alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.785
Swoo_1893
KEGG: sse:Ssed_2745 methyl-accepting chemotaxis protein.
  
     0.639
Swoo_4576
KEGG: saz:Sama_0272 hypothetical protein.
  
     0.590
Swoo_4271
KEGG: cps:CPS_2663 hypothetical protein.
  
     0.467
Swoo_0262
KEGG: sse:Ssed_0263 hypothetical protein.
  
     0.457
Swoo_3013
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spl:Spea_2584 tRNA/rRNA methyltransferase (SpoU).
  
     0.452
Swoo_2653
PFAM: protein of unknown function DUF1568; KEGG: sse:Ssed_1948 protein of unknown function DUF1568.
  
     0.438
Swoo_2882
KEGG: sse:Ssed_1709 hypothetical protein.
  
     0.430
Swoo_0196
PFAM: protein of unknown function DUF1568; KEGG: sse:Ssed_1948 protein of unknown function DUF1568.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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