Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_1373PFAM: conserved hypothetical protein; KEGG: cps:CPS_0514 tryptophan-rich conserved hypothetical protein. (71 aa)    
Predicted Functional Partners:
Swoo_1372
KEGG: vfi:VF1473 hypothetical protein.
       0.763
Swoo_4461
KEGG: shw:Sputw3181_0742 hypothetical protein.
  
     0.692
Swoo_1371
KEGG: pin:Ping_1949 hypothetical protein.
 
     0.660
Swoo_4053
KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein.
 
     0.588
Swoo_1370
KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family.
 
     0.516
Swoo_4142
PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50.
  
     0.497
Swoo_4057
PFAM: protein of unknown function UPF0153; KEGG: ppr:PBPRA2316 hypothetical protein.
 
     0.456
Swoo_1439
Serine/threonine protein kinase; PFAM: leucine-rich repeat protein; Leucine-rich repeat 2 protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: spl:Spea_2938 serine/threonine protein kinase.
  
     0.452
Swoo_3870
KEGG: sse:Ssed_3933 hypothetical protein.
 
     0.444
Swoo_2776
KEGG: slo:Shew_1480 protein of unknown function DUF1486.
 
     0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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