Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1392PFAM: Hydratase/decarboxylase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase. (263 aa)    
Predicted Functional Partners:
Swoo_1390
4-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
 
 
 0.993
Swoo_1391
Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
  
 0.980
Swoo_1406
PFAM: Hydratase/decarboxylase; KEGG: swi:Swit_0912 4-oxalocrotonate decarboxylase.
 
  
 
0.920
Swoo_2019
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: fra:Francci3_2770 4-hydroxyphenylacetate 3-hydroxylase.
 
  
 0.606
Swoo_1409
PFAM: Endoribonuclease L-PSP; KEGG: reu:Reut_B5501 endoribonuclease L-PSP.
    
  0.511
Swoo_0976
KEGG: mmw:Mmwyl1_3292 5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 0.471
Swoo_1393
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sus:Acid_2184 transcriptional regulator, LysR family.
       0.469
Swoo_1970
PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold.
  
  
 0.430
Swoo_3158
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_1511 alpha/beta hydrolase fold.
  
  
 0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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