STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1409PFAM: Endoribonuclease L-PSP; KEGG: reu:Reut_B5501 endoribonuclease L-PSP. (142 aa)    
Predicted Functional Partners:
Swoo_1410
TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_5132 aldehyde dehydrogenase.
 
 
  0.968
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.
 
     0.852
Swoo_1407
Aminocarboxymuconate-semialdehyde decarboxylase; PFAM: amidohydrolase 2; KEGG: aba:Acid345_0682 tryptophan 2,3-dioxygenase.
 
    0.842
Swoo_1406
PFAM: Hydratase/decarboxylase; KEGG: swi:Swit_0912 4-oxalocrotonate decarboxylase.
 
  
  0.753
Swoo_0106
TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: spl:Spea_4079 putative endoribonuclease L-PSP.
  
     0.745
Swoo_0812
PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 endoribonuclease L-PSP.
  
     0.665
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
 
    0.664
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
    0.630
Swoo_1392
PFAM: Hydratase/decarboxylase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase.
    
  0.510
Swoo_1402
KEGG: bbr:BB4423 putative esterase.
  
    0.438
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.