Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_1415PFAM: cytochrome c class I; KEGG: nwi:Nwi_2649 cytochrome c, class IC. (123 aa)    
Predicted Functional Partners:
Swoo_1416
KEGG: swi:Swit_1791 hypothetical protein.
 
 
 0.964
Swoo_1414
PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: net:Neut_1406 multicopper oxidase, type 3.
 
   
 0.878
Swoo_1417
PFAM: multicopper oxidase type 1; multicopper oxidase type 3; KEGG: net:Neut_1403 multicopper oxidase, type 3.
 
   
 0.799
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
   
 
 0.723
Swoo_2424
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sse:Ssed_2212 cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.717
Swoo_2425
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: sse:Ssed_2211 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.684
Swoo_2377
PFAM: blue (type 1) copper domain protein; KEGG: lbj:LBJ_2376 plastocyanin related protein.
  
   
 0.499
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
 
 
0.480
Swoo_3983
PFAM: YceI family protein; KEGG: mfa:Mfla_1355 YceI.
   
 
 0.477
Swoo_0178
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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