Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1433KEGG: sse:Ssed_2401 zinc carboxypeptidase-related protein. (320 aa)    
Predicted Functional Partners:
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
       0.500
Swoo_1432
KEGG: sse:Ssed_3194 hypothetical protein.
       0.500
Swoo_0386
KEGG: spl:Spea_0282 conserved hypothetical protein.
  
     0.485
Swoo_3370
KEGG: spl:Spea_0781 conserved hypothetical protein.
  
     0.477
Swoo_1710
KEGG: sse:Ssed_2935 hypothetical protein.
 
     0.471
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
  
     0.468
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
  
     0.467
Swoo_3729
KEGG: sse:Ssed_3506 hypothetical protein.
  
     0.457
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.446
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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