STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1434PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_3503 TonB-dependent receptor. (753 aa)    
Predicted Functional Partners:
Swoo_1438
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein.
  
     0.769
Swoo_1435
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family.
 
     0.723
Swoo_3836
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2390 argininosuccinate synthase.
  
    0.704
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.682
Swoo_4375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1397 TonB-dependent receptor.
  
    0.663
Swoo_1524
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sse:Ssed_1411 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
  
     0.628
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.617
Swoo_3839
KEGG: cps:CPS_0241 hypothetical protein.
  
     0.616
Swoo_3992
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor.
  
     0.605
Swoo_3837
PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase.
  
     0.590
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.