Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1489Hypothetical protein. (112 aa)    
Predicted Functional Partners:
Swoo_1488
KEGG: sdn:Sden_0141 hypothetical protein.
       0.773
Swoo_1487
Hypothetical protein.
       0.701
Swoo_1486
Hypothetical protein.
       0.599
Swoo_1485
KEGG: vha:VIBHAR_02054 hypothetical protein.
       0.532
Swoo_1490
KEGG: vha:VIBHAR_07071 hypothetical protein.
       0.496
Swoo_1491
Hypothetical protein.
       0.457
Swoo_1492
KEGG: vha:VIBHAR_07070 hypothetical protein.
       0.449
Swoo_1493
KEGG: sdn:Sden_0142 hypothetical protein.
       0.449
Swoo_1494
KEGG: vha:VIBHAR_02045 hypothetical protein.
       0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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