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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1497Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: sse:Ssed_1364 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Swoo_1496
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sse:Ssed_1363 oxidoreductase, short-chain dehydrogenase/reductase family.
 
     0.737
Swoo_4048
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr1855 hypothetical protein.
  
     0.565
Swoo_1495
KEGG: sse:Ssed_1362 anti-ECFsigma factor, ChrR.
       0.489
Swoo_2093
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_3318 transcriptional regulator, AraC family.
  
    0.471
Swoo_3398
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3255 GCN5-related N-acetyltransferase.
  
     0.471
Swoo_2374
PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_1931 GCN5-related N-acetyltransferase.
  
     0.450
Swoo_2795
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sse:Ssed_1801 transcriptional regulator, AraC family.
  
    0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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