Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1500PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; protease-associated PA domain protein; peptidase domain protein; KEGG: sbn:Sbal195_2959 protease-associated PA domain protein; Belongs to the peptidase S8 family. (1293 aa)    
Predicted Functional Partners:
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.662
Swoo_2845
KEGG: sse:Ssed_1739 hypothetical protein.
  
    0.640
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.636
Swoo_1168
KEGG: sse:Ssed_1086 general secretion pathway protein B.
  
    0.621
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.614
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.613
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.611
Swoo_2165
KEGG: sse:Ssed_2440 hypothetical protein.
  
     0.592
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.578
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
 
   0.567
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.