Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1503PFAM: regulatory protein MarR; KEGG: saz:Sama_2690 transcriptional regulator, MarR family. (189 aa)    
Predicted Functional Partners:
Swoo_1502
KEGG: saz:Sama_2689 hypothetical protein.
 
     0.840
Swoo_0436
KEGG: cps:CPS_4903 hypothetical protein.
 
     0.663
Swoo_2994
KEGG: cps:CPS_0486 BNR repeat protein.
  
     0.639
Swoo_2995
KEGG: cps:CPS_0487 hypothetical protein.
  
     0.609
Swoo_1501
KEGG: bbr:BB2475 hypothetical protein.
 
     0.534
Swoo_4015
KEGG: ppr:PBPRA0857 hypothetical protein.
  
     0.442
Swoo_2076
PFAM: major facilitator superfamily MFS_1; KEGG: sbn:Sbal195_2468 major facilitator superfamily MFS_1.
  
     0.425
Swoo_2662
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1862 TonB-dependent receptor.
  
     0.420
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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