STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1531PFAM: protein of unknown function DUF980; KEGG: sse:Ssed_1418 protein of unknown function DUF980; Belongs to the MtfA family. (279 aa)    
Predicted Functional Partners:
Swoo_1533
PFAM: extracellular solute-binding protein family 1; KEGG: sse:Ssed_1420 extracellular solute-binding protein, family 1.
       0.622
Swoo_1532
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_1419 diguanylate cyclase.
       0.615
Swoo_1530
KEGG: sse:Ssed_1417 hypothetical protein.
       0.594
Swoo_1179
PFAM: SNARE associated Golgi protein; KEGG: spl:Spea_3035 SNARE associated Golgi protein.
  
  
 0.507
Swoo_4623
PFAM: peptidase domain protein; KEGG: hch:HCH_03665 predicted phosphohydrolase.
  
     0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.