Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1575KEGG: sse:Ssed_3107 protein of unknown function DUF115. (833 aa)    
Predicted Functional Partners:
Swoo_1582
PFAM: N-acetylneuraminic acid synthase domain; KEGG: sse:Ssed_3100 N-acylneuraminate-9-phosphate synthase.
 
   
 0.790
Swoo_1580
Nucleotidyl transferase; PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: sse:Ssed_3102 mannose-1-phosphate guanyltransferase.
 
 
   0.767
Swoo_1578
PFAM: acylneuraminate cytidylyltransferase; KEGG: sse:Ssed_3104 N-acylneuraminate cytidylyltransferase.
 
     0.693
Swoo_1584
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ckl:CKL_2470 predicted polysialic acid biosynthesis protein.
 
     0.686
Swoo_1586
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sse:Ssed_3098 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.678
Swoo_1581
KEGG: sse:Ssed_3101 sialic acid biosynthesis protein NeuD.
 
     0.646
Swoo_4511
KEGG: sse:Ssed_0458 hypothetical protein.
  
     0.540
Swoo_1583
PFAM: LmbE family protein; KEGG: sru:SRU_0604 hypothetical protein.
       0.531
Swoo_1579
PFAM: oxidoreductase domain protein; KEGG: sse:Ssed_3103 dehydrogenase.
       0.525
Swoo_1576
PFAM: transferase hexapeptide repeat containing protein; KEGG: sse:Ssed_3106 acetyltransferase.
       0.517
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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