Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1590KEGG: sse:Ssed_3094 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Swoo_1591
PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400.
 
  
 0.951
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
 
   
 0.780
Swoo_0788
KEGG: sse:Ssed_3796 hypothetical protein.
  
     0.772
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.772
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.771
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.769
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
     0.768
Swoo_2606
KEGG: sse:Ssed_1994 hypothetical protein.
  
     0.748
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
  
     0.735
Swoo_2272
KEGG: spl:Spea_2053 conserved hypothetical protein.
  
     0.732
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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