Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_1591PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400. (148 aa)    
Predicted Functional Partners:
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
 
 
 
 0.975
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
 
 
 0.963
Swoo_1590
KEGG: sse:Ssed_3094 hypothetical protein.
 
  
 0.951
Swoo_2738
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1851 OmpA/MotB domain protein.
  
 
 
 0.879
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
  
 
 0.860
Swoo_1618
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
 
 
 0.835
Swoo_1602
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sse:Ssed_3082 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
   
 
 0.787
Swoo_1600
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: slo:Shew_1348 flagellar basal body FlaE domain protein.
  
   0.781
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.768
Swoo_1597
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
   0.766
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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