Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1640KEGG: sse:Ssed_3044 hypothetical protein. (206 aa)    
Predicted Functional Partners:
cheB-2
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
       0.777
Swoo_1638
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sse:Ssed_3046 CheA signal transduction histidine kinase.
       0.696
Swoo_1637
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
       0.659
Swoo_1641
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sse:Ssed_3043 cobyrinic acid a,c-diamide synthase.
       0.654
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
       0.654
Swoo_1643
PFAM: CheW domain protein; KEGG: sse:Ssed_3041 CheW protein.
       0.654
Swoo_1636
PFAM: response regulator receiver; KEGG: sse:Ssed_3048 response regulator receiver protein.
       0.632
Swoo_1633
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: sse:Ssed_3051 GTP-binding signal recognition particle SRP54, G-domain.
       0.554
Swoo_1634
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sse:Ssed_3050 cobyrinic acid a,c-diamide synthase.
       0.554
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
       0.554
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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