Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1644KEGG: sse:Ssed_3040 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
 
  
 0.927
Swoo_1637
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.840
Swoo_1641
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sse:Ssed_3043 cobyrinic acid a,c-diamide synthase.
 
  
 0.759
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
    0.758
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
     0.756
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.755
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.754
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
   
 0.748
Swoo_1633
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: sse:Ssed_3051 GTP-binding signal recognition particle SRP54, G-domain.
 
    0.747
Swoo_1591
PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400.
  
     0.745
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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