Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1653PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein. (321 aa)    
Predicted Functional Partners:
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
 
 
 0.979
Swoo_1699
PFAM: polysaccharide export protein; KEGG: sse:Ssed_2946 polysaccharide export protein.
 
 
 0.887
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.699
Swoo_1654
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: son:SO_3190 polysaccharide biosynthesis protein.
  
  
 0.693
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.688
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
  
  
 0.650
Swoo_0077
KEGG: sse:Ssed_0116 hypothetical protein.
 
   
 0.640
Swoo_1652
PFAM: S23 ribosomal protein; KEGG: sfr:Sfri_2842 S23 ribosomal protein.
 
   
 0.634
Swoo_1707
KEGG: spl:Spea_1438 conserved hypothetical protein.
 
   
 0.628
Swoo_2753
KEGG: sse:Ssed_1835 hypothetical protein.
  
     0.539
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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