STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1665KEGG: pst:PSPTO_1915 bacterial transferase, hexapeptide repeat protein. (212 aa)    
Predicted Functional Partners:
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.966
Swoo_1670
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vvy:VV0363 pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.921
Swoo_1663
PFAM: glycosyl transferase group 1; KEGG: smd:Smed_4567 glycosyl transferase group 1.
 
  
 0.855
Swoo_1586
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sse:Ssed_3098 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.845
Swoo_1666
PFAM: phosphopantetheine-binding; KEGG: vha:VIBHAR_00674 hypothetical protein.
       0.773
Swoo_1660
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pin:Ping_0789 fused dTDP-4-dehydrorhamnose reductase and 3-beta hydroxysteroid dehydrogenase/isomerase.
 
  
 0.765
Swoo_1582
PFAM: N-acetylneuraminic acid synthase domain; KEGG: sse:Ssed_3100 N-acylneuraminate-9-phosphate synthase.
 
  
 0.722
Swoo_1587
PFAM: polysaccharide biosynthesis protein CapD; KEGG: sse:Ssed_3097 nucleoside-diphosphate sugar epimerase.
 
  
 0.679
Swoo_1680
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: sbl:Sbal_2876 polysaccharide biosynthesis protein CapD.
 
  
 0.657
Swoo_1667
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bpd:BURPS668_3877 3-oxoacyl-(acyl-carrier-protein) synthase III.
       0.653
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.