Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1675KEGG: sfu:Sfum_1625 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Swoo_1907
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
     0.716
Swoo_3247
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sbn:Sbal195_1860 peptidase S1 and S6 chymotrypsin/Hap.
  
    0.676
Swoo_1677
KEGG: sde:Sde_0798 hypothetical protein; TIGRFAM: conserved repeat domain protein; PFAM: Ig family protein; FG-GAP repeat protein; SMART: Dystroglycan-type cadherin domain protein.
 
    0.632
Swoo_1676
Hypothetical protein.
       0.618
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
   
 
 0.565
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
  
     0.541
Swoo_0985
KEGG: slo:Shew_3563 hypothetical protein.
  
     0.537
Swoo_2369
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: mxa:MXAN_2316 EF hand domain protein.
  
     0.534
Swoo_3431
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: sse:Ssed_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.488
Swoo_1186
PFAM: amidohydrolase; KEGG: hne:HNE_0404 amidohydrolase family protein.
  
     0.473
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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