Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1679PFAM: protein of unknown function DUF255; KEGG: hch:HCH_06582 highly conserved protein containing a thioredoxin domain. (760 aa)    
Predicted Functional Partners:
Swoo_1678
PFAM: ASPIC/UnbV domain protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: gfo:GFO_1031 secreted protein containing FG-GAP repeats.
 
     0.515
Swoo_1677
KEGG: sde:Sde_0798 hypothetical protein; TIGRFAM: conserved repeat domain protein; PFAM: Ig family protein; FG-GAP repeat protein; SMART: Dystroglycan-type cadherin domain protein.
   
   0.507
Swoo_3385
PFAM: FG-GAP repeat protein; KEGG: sdn:Sden_3318 integrins alpha chain.
  
 
   0.434
Swoo_1680
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: sbl:Sbal_2876 polysaccharide biosynthesis protein CapD.
       0.424
Swoo_3429
MAM protein; PFAM: PKD domain containing protein; MAM protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: xcv:XCV1064 putative secreted protein.
  
 
   0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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