STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1697KEGG: sse:Ssed_2948 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Swoo_1699
PFAM: polysaccharide export protein; KEGG: sse:Ssed_2946 polysaccharide export protein.
 
  
 0.965
Swoo_1698
KEGG: sse:Ssed_2947 hypothetical protein.
 
  
 0.954
Swoo_1696
PFAM: polysaccharide biosynthesis protein; KEGG: sse:Ssed_2949 polysaccharide biosynthesis protein.
 
  
 0.934
Swoo_1695
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2950 glycosyl transferase, family 2.
 
  
 0.879
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
 
  
 0.817
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.704
Swoo_0795
PFAM: glycosyl transferase group 1; KEGG: sse:Ssed_3788 glycosyltransferase.
 
  
 0.654
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
 
  
 0.606
Swoo_1587
PFAM: polysaccharide biosynthesis protein CapD; KEGG: sse:Ssed_3097 nucleoside-diphosphate sugar epimerase.
  
  
 0.539
Swoo_1660
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pin:Ping_0789 fused dTDP-4-dehydrorhamnose reductase and 3-beta hydroxysteroid dehydrogenase/isomerase.
  
  
 0.539
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.