Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_1726TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sse:Ssed_2908 TRAP dicarboxylate transporter, DctP subunit. (344 aa)    
Predicted Functional Partners:
Swoo_1725
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sse:Ssed_2909 tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.975
Swoo_1732
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB3002 putative transport protein.
  
  
  0.961
Swoo_1724
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sse:Ssed_2910 TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.960
Swoo_3750
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
 
 0.931
Swoo_3619
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
 
 0.928
Swoo_1735
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bpt:Bpet2230 putative membrane protein (TRAP-type transport system, large permease component).
 
  
 0.858
Swoo_0510
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: sse:Ssed_4113 succinate dehydrogenase; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
      
 0.580
Swoo_3752
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: maq:Maqu_3479 TRAP dicarboxylate transporter, DctM subunit.
 
   
 0.533
Swoo_0847
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vfi:VF1090 transporter.
  
   
 0.479
Swoo_1723
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2911 ATP-binding region, ATPase domain protein.
 
     0.477
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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