Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Swoo_1729Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF1378 transcriptional regulators, LysR family. (291 aa)    
Predicted Functional Partners:
Swoo_1720
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2914 transcriptional regulator, LysR family.
  
     0.756
Swoo_1933
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2686 transcriptional regulator, LysR family.
  
     0.672
Swoo_0120
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2531 transcriptional regulator, LysR family.
  
     0.671
Swoo_4058
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3712 transcriptional regulator.
  
     0.649
Swoo_0141
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_0161 conserved hypothetical transcriptional regulator.
  
     0.625
Swoo_2099
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06316 transcriptional regulator.
  
     0.591
Swoo_2472
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2137 transcriptional regulator, LysR family.
  
     0.472
Swoo_1734
KEGG: bpt:Bpet2229 hypothetical protein.
  
     0.467
Swoo_1731
PFAM: protein of unknown function DUF1445; KEGG: vfi:VF1377 hypothetical protein; Belongs to the D-glutamate cyclase family.
  
     0.452
Swoo_2584
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2021 transcriptional regulator, LysR family.
  
     0.451
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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