Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1734KEGG: bpt:Bpet2229 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Swoo_1725
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sse:Ssed_2909 tripartite ATP-independent periplasmic transporter, DctQ component.
  
  
  0.919
Swoo_1735
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bpt:Bpet2230 putative membrane protein (TRAP-type transport system, large permease component).
 
    0.908
Swoo_3621
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: saz:Sama_2544 TRAP-type transport system, small permease component.
     
  0.900
Swoo_3751
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: cps:CPS_1403 C4-dicarboxylate transporter family protein, DctQ subunit.
     
  0.900
Swoo_1732
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB3002 putative transport protein.
 
   
 0.887
Swoo_1731
PFAM: protein of unknown function DUF1445; KEGG: vfi:VF1377 hypothetical protein; Belongs to the D-glutamate cyclase family.
 
     0.727
Swoo_1733
Hypothetical protein.
       0.605
Swoo_1737
PFAM: Allophanate hydrolase subunit 1; KEGG: vfi:VF1375 kinase autophosphorylation inhibitor KipI.
       0.536
Swoo_1738
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: mmw:Mmwyl1_0359 UreA amidolyase related protein.
       0.536
Swoo_1736
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.533
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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