Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1749Oxidoreductase domain protein; Glycosidase. (467 aa)    
Predicted Functional Partners:
Swoo_0366
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
 
     0.735
Swoo_0365
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3701 hypothetical protein.
 
  
 0.705
Swoo_4579
KEGG: sse:Ssed_0338 hypothetical protein.
 
     0.673
Swoo_4578
PFAM: aminoglycoside phosphotransferase; KEGG: sse:Ssed_0339 aminoglycoside phosphotransferase.
 
     0.666
Swoo_1314
KEGG: sse:Ssed_1214 hypothetical protein.
  
     0.656
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: spl:Spea_0757 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.621
Swoo_1174
KEGG: spl:Spea_0980 hypothetical protein.
  
     0.560
Swoo_0367
PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase.
 
     0.545
Swoo_0363
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: sde:Sde_1707 hypothetical protein.
 
  
 0.509
Swoo_3940
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pdi:BDI_2661 gluconolactonase precursor.
 
  
 0.501
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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