Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1765Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sse:Ssed_2883 response regulator receiver protein. (232 aa)    
Predicted Functional Partners:
Swoo_1766
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sse:Ssed_2882 signal transduction histidine kinase, LytS.
 
 0.997
Swoo_4847
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3732 putative regulator of cell autolysis-like.
 
 
 0.855
Swoo_4381
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: cps:CPS_3719 sensor histidine kinase.
 
 
 0.853
Swoo_1767
KEGG: sse:Ssed_2881 hypothetical protein.
 
     0.598
Swoo_1764
PFAM: carbon starvation protein CstA; KEGG: sse:Ssed_2884 carbon starvation protein CstA.
 
   
 0.589
Swoo_0569
PFAM: conserved hypothetical protein; KEGG: slo:Shew_3353 conserved hypothetical protein 22.
  
     0.459
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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