Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1767KEGG: sse:Ssed_2881 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Swoo_0240
KEGG: spl:Spea_3967 formate-dependent nitrite reductase.
  
     0.672
Swoo_1766
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sse:Ssed_2882 signal transduction histidine kinase, LytS.
 
     0.606
Swoo_0242
TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_3965 polysulphide reductase NrfD.
  
     0.598
Swoo_1765
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sse:Ssed_2883 response regulator receiver protein.
 
     0.598
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
  
     0.592
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.591
Swoo_0271
KEGG: spl:Spea_3943 conserved hypothetical protein.
  
     0.565
Swoo_1023
KEGG: sse:Ssed_0974 hypothetical protein.
  
     0.521
Swoo_1808
PFAM: protein of unknown function UPF0227; KEGG: sse:Ssed_2836 protein of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.503
Swoo_4453
KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein.
  
     0.500
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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